PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG113100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 231aa    MW: 24167.2 Da    PI: 5.7214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG113100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09116156348
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv 48 
                          ++h e Er+RR+++N +f  Lr  +P+       +++Ka+ L  A 
  Pavir.1KG113100.1.p 116 ASHVESERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAA 156
                          6899***********************5.....4899999988775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.385113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10115157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-10116158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-7116156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-8117157No hitNo description
SMARTSM003530.0025119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDEHLSPSSP SRPSPFSFSE ASCTILELPS FEVPEQWLLA ADVVAAGENE NDDDVGACLG  60
ETPPPPAAAC GVLSPPDSEL SKLLLPSPSA PAPAPAPAKR RGRKPGPRPD AGAAAASHVE  120
SERQRREKLN RRFCDLRAAV PTVSRMDKAS LLADAARWEA ASAGGDAAAA AVGGELYVRK  180
VGRDAAVVRV TSGARHAPAW LMDALRSLEL QVQHACVSRA RGVTTQDVLV D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065252e-46AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072542e-46AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149652e-46AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-46CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460537.12e-81hypothetical protein SORBIDRAFT_02g030110
SwissprotQ392042e-22MYC2_ARATH; Transcription factor MYC2
TrEMBLC5X6062e-81C5X606_SORBI; Putative uncharacterized protein Sb02g030110
STRINGSb02g030110.16e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.14e-11bHLH family protein